Category: Sequence - Phylogeny

Programs:

• atv - Draw and edit phylogenetic trees
• consense - Consensus trees
• dnacomp - DNA phylogeny using compatability method
• dnadist - Construct distance matrix for DNA sequences
• dnainvar - DNA sequence phylogeny invariants
• dnaml - DNA phylogeny using Maximum Likelihood
• dnamlk - DNA phylogeny using Maximum Likelihood (with evolutionary clock)
• dnamove - DNA parsimony with interactive tree rearrangement
• dnapars - DNA parsimony
• dnapenny - DNA parsimony using branch and bound method
• dollop - Discrete data parsimony method of DOLLO
• drawgram - Draw cladograms
• drawtree - Draw radial trees
• fastDNAml - DNA maximum likelihood
• fitch - Distance trees - Fitch/ Margoliash
• kitsch - Distance trees - Fitch/ Margoliash (molecular clock)
• neighbor - Distance trees - Neighbor-Joining/UPGMA
• protdist - Construct distance matrix for protein sequences
• protpars - Protein parsimony
• reticulate - Detect reticulate evolution by DNA compatability
• seqboot - Create resampled datasets
• tbiolegato - bioLegato interface for phylogenetic trees
• tGDE - GDE interface for phylogenetic trees
• treedist - Calculate distance between trees
• treetool - Phylogenetic tree editor